File:Unlocking-Short-Read-Sequencing-for-Metagenomics-pone.0011840.g001.jpg

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Unlocking-Short-Read-Sequencing-for-Metagenomics-pone.0011840.g001.jpg(662 × 533 pixels, file size: 157 KB, MIME type: image/jpeg)

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English: AMPure XP SPRI beads bind DNA fragments in a size dependent manner according to the concentration of salts and polyethylene glycol (PEG) in the reaction [4]–[7], which can easily be changed by using different volume ratios of DNA to SPRI bead solutions. A two-step procedure is employed to isolate targeted DNA size fractions. Panels A to H present Bioanalyzer DNA-1000 assays showing the sheared genomic DNA used as starting material (black), the larger size DNA fragments discarded in separation 1 (red), and the size fraction purified and recovered after separation 2 (blue). Panel I is a table summarizing the conditions and results displayed in panels A to H. All Bioanalyzer DNA-1000 traces after separation 1 (panel J), and after separation 2 (panel K), are respectively displayed on a graph for the conditions presented in panels A to H. The conditions displayed in panel H were used to obtaine the Illumina composite reads discussed in the text. The wider DNA fragment size distribution from panel H allowed to better analyze the effects of shorter versus longer overlapping regions on consensus reads.
Date
Source Image file from Rodrigue S, Materna A, Timberlake S, Blackburn M, Malmstrom R, Alm E, Chisholm S (2010). "Unlocking Short Read Sequencing for Metagenomics". PLOS ONE. DOI:10.1371/journal.pone.0011840. PMID 20676378. PMC: 2911387.
Author Rodrigue S, Materna A, Timberlake S, Blackburn M, Malmstrom R, Alm E, Chisholm S
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Date/TimeThumbnailDimensionsUserComment
current21:47, 11 October 2014Thumbnail for version as of 21:47, 11 October 2014662 × 533 (157 KB)Recitation-botAutomatic upload of media from: doi:10.1371/journal.pone.0011840

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